Ifremer marine model organisms catalog portal.

JBrowse 2 interface for genome of model organisms studied by Ifremer scientists.


to access Ifremer Genome Catalog

Support information

  • Category: Genome Catalog
  • Coordinator: SeBiMER
  • Availability: Public and intranet instance

Genome Catalog

The Ifremer Genome Catalog platform provides access to omics resources of marine model organisms studied at Ifremer.

It addresses two needs:

  1. To provide access to genomes (and associated data) directly sequenced by Ifremer teams;
  2. To provide access to public genomes used as references for new analyses conducted by Ifremer teams.

Implemented by the bioinformatics service of Ifremer (SeBiMER), affiliated with the IRSI department (Research Infrastructures and Information Systems), in collaboration with various research teams (ASIM, La Tremblade; GENALG, Nantes; IHPE, Montpellier; RMPF, Tahiti), which actively contributed to the development of the specifications document. Omics Catalog pipeline and Keshif tool are available on GitHub.