Results of ORSON pipeline loaded into BlastViewer UI software.
Genomes Catalog and JBrowse2 session created by Omics-Catalog pipeline.
Metabarcoding data analysis report created by SAMBA pipeline.
SeBiMER workflows
SeBiMER creates workflows relying on the Nextflow framework. Often such pipelines are designed as part of a data analysis project to standardise and turn as FAIR as possible the combined use of several bioinformatics softwares. We also ensure that pipelines are optimally executed on a high-performance computing infrastructure.
We also setup particular workflows to manage our own activities on Ifremer's bioinformatics platform.
You can find all our free and open-source workflows by visiting our Gitlab and Github project pages. Some workflows are also available from workflowhub.eu.
Below, are some examples of softwares contributed by SeBiMER:
